Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THYM rs200353631 chr9:97120633 A/AT 8.53E-5 118 41.77 42.73 17.03 KM Plot
THYM rs200392058 chr10:13976469 CTTT/C 0.000296 119 48 35 12.87 KM Plot
THYM rs200442624 chr6:151423401 G/GCCCAA 0 119 38.13 55.1 4.13 KM Plot
THYM rs200492010 chr4:70069624 TTATA/T 5.73E-13 118 39.75 49.6 6 KM Plot
THYM rs200502893 chr6:151428171 CT/C 0 116 37.13 55 4.13 KM Plot
THYM rs200526 chr16:24760511 C/T 2.5E-9 118 12.63 30.03 48 KM Plot
THYM rs200528 chr16:24759131 A/G 2.5E-9 118 12.63 30.03 48 KM Plot
THYM rs200531 chr16:24756172 G/A 2.5E-9 118 12.63 30.03 48 KM Plot
THYM rs200536015 chr9:97169412 GT/G 7.78E-5 119 41.77 40.43 17.03 KM Plot
THYM rs200537 chr16:24747787 G/C 2.5E-9 118 12.63 30.03 48 KM Plot
THYM rs200541 chr16:24733141 A/G 2.3E-9 116 12.63 28 46.27 KM Plot
THYM rs200683249 chr4:115543559 C/T 0 119 38.23 52.95 4.13 KM Plot
THYM rs200737169 chr9:97136049 C/T 7.78E-5 119 41.77 40.43 17.03 KM Plot
THYM rs200907125 chr4:70113926 AT/TT 4.7E-13 119 41.77 35 6 KM Plot
THYM rs201007243 chr1:227488791 TG/T 0.000123 119 42.82 37.13 19.63 KM Plot